Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
PRAD rs80012122 chr2:204823687 G/T 4.3E-11 490 30.77 34.2 20.33 KM Plot
PRAD rs80034313 chr11:6922453 T/C 1.53E-12 484 30.8 29.97 18.13 KM Plot
PRAD rs80068115 chr9:72946857 G/A 1.75E-5 492 30.8 31.4 22.45 KM Plot
PRAD rs80111247 chr11:129979281 T/A 1.96E-6 494 30.93 31.3 22.8 KM Plot
PRAD rs80209774 chr5:171530575 G/A 3.52E-7 491 30.87 32 13.17 KM Plot
PRAD rs8023333 chr15:83236050 C/A 3.29E-5 477 31.13 31.02 28.02 KM Plot
PRAD rs80244531 chr5:150839852 C/G 8.55E-5 483 30.53 33.37 31.15 KM Plot
PRAD rs8024474 chr15:39012579 C/T 0.000135 475 31.4 29.8 32.25 KM Plot
PRAD rs80248726 chr2:178804463 T/C 4.23E-5 493 30.78 31.93 20.48 KM Plot
PRAD rs8028313 chr15:68043057 C/G 8.59E-5 485 33.47 27.57 25.67 KM Plot
PRAD rs80286869 chr5:154357652 A/G 0 489 30.33 32.85 5.58 KM Plot
PRAD rs80309470 chr11:24220630 CTTAG/C 2.97E-8 493 30.93 31.43 20.93 KM Plot
PRAD rs80320191 chr6:43238395 C/T 6.99E-10 482 31.23 27.18 44.3 KM Plot
PRAD rs80348867 chr1:167509658 G/A 0.00013 494 30.93 30.9 15.77 KM Plot
PRAD rs8035989 chr15:67965620 G/A 4.35E-5 493 33.37 27.97 27.58 KM Plot